SNP markers for Candida albicans

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No. on SNP map Marker CH/SfiI Contig-19 Size of PCR product Position and ID
Of polymorphisms
(5'-3' F primer)		 Number of
polymorphims
3 1645/2358 RM 19-10151 186 34 (a/g) 2
91 (c/t)
4 1261/2409 RM 19-10190 277 69 (a/g) 4
88 (a/g)
140 (a/c)
233 (a/g)
12 1642/2179 R(K) 19-10040 231 52 (c/g) 6
118 (g/t)
120 (g/t)
137 (c/g)
170 (a/t)
189 (a/g)
2 1381/2345 RM 19-10161 218 54 (c/t) 3
91 (g/t)
145 (a/g)
1 B13B19 #_ RM 19-10161 956 449 (c/t) 5
605 (a/g)
640 (a/g)
850 (a/g)
865 (a/g)
11 2270/2288 RK 19-10148 162 23 (a/g) 5
61 (a/t)
116 (a/g)
133 (a/g)
139 (c/g)
10 1625/2453 R(K) 19-10203 183 54 (c/t) 3
72 (a/g)
127 (a/g)
9 1458/2280 R(K) 19-10203 196 34 (a/g) 5
40-41 (indel; --/CT)
48 (c/t)
144 (c/t)
165 (c/t)
15 2083/2220 RK,S 19-10053 133 83 (a/g) 1
14 C12F10 * RK,S 19-10053 284 none
13 1560/2471 RK,S 19-10053 153 22 (a/g) 2
59 (a/g)
6 1694/2254 RK 19-10063 187 28 (c/t) 3
58 (c/t)
145 (c/t)
7 1918/1928 (C15F2)* RK 19-10052 331 174 (a/g) 2
207 (a/g)
5 1477/2396 RK 19-10193 198 34 (a/g) 2
109 (a/g)
45 1541/2137 1 19-10070 224 30 (g/t) 4
47 (c/t)
178 (a/c)
191 (a/g)
150 1891/2157 R 19-10147 301 95 (a/g) 5
125 (c/t)
198 (a/g)
228 (c/t)
271-276 (indel; ------/AAGTTG)
21 C2F10 * R 19-10129 264 none
20 2388/2421 RS,U 19-10238 139 78 (c/t) 2
99 (a/g)
19 2060/2400 RS,U 19-10188 181 24 (c/t) 3
54 (a/g)
138 (c/t)
18 1772/2368 R (S or U) 19-10057 169 29 (a/g) 2
127 (c/t)
16 1158/2429 RS or U 19-10247 187 71 (c/t) 3
98 (a/g)
154 (c/t)
17 E15n6 & RS,U 19-10247 733 none
23 1799/2450 R 19-10237 195 40 (a/g) 6
53 (c/t)
72 (c/t)
77 (a/g)
89 (c/t)
164 (g/t)
22 1322/2294 1S 19-10237 268 74 (a/c) 2
170 (a/g)
28 1449/2362 1S 19-10173 244 70 (a/t) 4
135 (c/t)
151 (a/g)
189 (a/g)
29 1363/2056 (GAL1) 1S 19-10186 171 26 (a/t) 3
59 (a/g)
139 (a/t)
26 2281/2302 1S 19-10163 196 24 (a/g) 6
114 (c/t)
147 (a/g)
157 (a/g)
184 (c/t)
203 (c/t)
218 (c/t)
27 2032/2371 1S 19-10163 167 25 (a/t) 3
65 (c/t)
116 (a/t)
24 MNS1 ^_ 1S 19-10087 397 87 (a/g) 1
25 2036/2375 1S 19-10087 223 78 (c/t) 4
141 (a/g)
155 (c/t)
163 (a/t)
46 1584/2265 1 19-10073 236 34 (c/t) 8
37 (g/t)
89 (c/t)
113 (c/t)
122 (a/g)
123 (a/g)
125 (g/t)
150 (a/g)
8 1983/2203 R(K) 19-10052 139 53 (c/t) 3
66 (c/t)
95 (a/g)
41 2347/2406 1CC,1A 19-10241 221 30 (c/t) 7
49 (c/t)
86 (a/g)
104 (a/g)
116 (c/t)
174 (a/t)
189 (c/t)
40 B8B12 # 1B 19-10205 223 none
39 CPH1 ^_ 1B 19-10205 813 76 (a/g) 5
121 (c/t)
124 (a/g)
592 (a/g)
634 (a/g)
38 2262/2275 1(J) 19-10159 250 37 (a/c) 5
129-131 (indel; ---/ACC)
187 (a/g)
201 (a/g)
213 (a/g)
37 B8B16 # 1(J) 19-10159 182 none
33 1179/2238 1J 19-10218 262 28 (c/t) 7
68 (a/g)
82 (c/t)
98 (a/t)
107 (g/t)
113 (c/t)
187 (c/t)
32 F12n4 &_ 1J 19-10218 938 353 (a/t) 3
431 (a/g)
575 (a/g)
34 1794/2304 1J 19-10215 203 97 (c/t) 2
138 (a/g)
35 1916/2198 1J 19-10215 236 30 (c/t) 3
86 (c/t)
196 (c/t)
36 1556/2491 1J 19-10215 215 33 (a/g) 4
141 (c/t)
150-152(indel; ---/GTC)
181 (a/g)
30 1622/2428 1E 19-10081 248 34 (c/g) 4
100 (a/g)
175 (a/c)
193 (a/g)
31 1361/2464 1E 19-10064 1332 36 (c/t) 2
64 (c/t)
147 2080/2297 (DLH1) 1 19-10191 631 77 (c/t) 5
288 (a/g)
302 (a/g)
500 (a/g)
584 (a/g)
42 2106/2441 1L 19-10216 252 30 (g/t) 7
40 (a/c)
138 (a/c)
159 (a/g)
178 (c/t)
180 (a/g)
182 (a/g)
43 1729/2211 1L 19-10216 159 39 (a/c) 4
99 (a/g)
124 (c/t)
130 (a/g)
47 C2F17(1353/2363)* 2U 19-10139 294 206 (c/t) 2
261 (a/g)
48 1353/2363 2U 19-10139 190 68 (a/c) 2
110 (a/c)
49 1551/2437 2U 19-10139 199 27 (a/g) 3
64 (a/t)
168 (a/g)
60 2051/2483 2U 19-10119 193 83 (g/t) 3
105 (a/g)
126 (c/t)
61 1517/2458 2U 19-10119 199 36 (c/t) 4
45 (c/t)
77 (g/t)
92 (a/t)
62 ERG7 ^ 2U 19-10119 320 none
58 2370/2467 2U 19-10234 140 58 (a/g) 3
82 (a/c)
85 (a/g)
57 1283/2296 2U 19-10076 193 76 (a/c) 2
96 (c/t)
56 1398/2125 2U 19-10076 210 26 (a/g) 3
52 (c/t)
101 (c/t)
55 2184/2321 2U 19-10208 181 74 (a/g) 2
143 (a/g)
63 1760/2185 2U 19-10044 267 96 (a/g) 4
117 (a/t)
180 (a/t)
221 (a/g)
59 1337/2356 2U 19-10183 240 83 (a/g) 4
85 (c/t)
90 (a/g)
165 (c/t)
64 1709/2474 2U 19-10196 150 44 (c/t) 3
51 (a/c)
121 (a/g)
50 C20n4 & 2U 19-10014 845 none
51 2001/2434 2U 19-10014 173 44 (c/t) 8
73 (a/g)
77 (a/g)
78 (a/g)
81 (a/g)
101 (c/t)
108 (c/t)
142 (c/t)
54 1775/2077 2U 19-10143 139 42 (a/g) 3
55 (a/t)
66 (c/t)
53 1414/2481 2U 19-10135 162 81 (g/t) 5
99 (a/g)
105 (a/c)
123 (c/t)
135 (a/g)
52 2242/2334 2U 19-10141 120 34 (a/g) 3
35 (a/t)
74 (c/t)
65 1262/2474 2U 19-10196 137 31 (a/g) 3
43 (c/g)
57 (a/c)
66 2046/2319 2U 19-10113 256 79 (c/t) 4
124 (a/g)
134 (c/t)
217 (a/g)
67 1600/2122 2U 19-10125 238 86 (a/g) 2
204 (c/g)
68 1314/2038 2U 19-10125 268 51 (a/g) 7
63 (a/t)
90 (c/t)
126 (a/g)
133 (a/c)
150 (c/t)
205 (a/g)
69 GCN1(2510)^ 2A 19-10225 309 none
73 1423/2317 3O 19-10227 217 45 (a/g) 2
142 (g/t)
44 2091/2447 1 19-10150 262 43 (a/g) 9
57 (a/g)
58 (a/c)
82 (a/g)
123 (g/t)
141 (c/t)
183 (a/g)
210 (c/t)
228 (a/g)
76 2195/2207 3O 19-10123 219 67 (c/t) 4
101 (a/t)
131 (c/t)
194 (c/t)
75 1848/2210 3O 19-10123 188 37 (a/g) 5
63 (g/t)
78 (c/t)
138 (a/g)
164 (a/g)
74 1808/1882 3O 19-10123 223 43-45 (indel; ---/TAG) 4
72 (a/g)
95 (a/t)
185 (a/g)
77 1629/1863 3O 19-10046 120 22 (c/g) 2
33 (a/c)
78 2095/2215 3O 19-10046 209 49 (a/g) 3
113 (a/t)
161 (c/t)
79 B5B20(1838/2419)# 3 19-10046 754 185 (c/t) 7
221 (c/t)
280 (c/t)
360 (a/g)
381 (a/g)
609 (c/t)
624 (c/t)
80 C18n1 &_ 3O 19-10046 813 439 (a/g) 5
479 (a/g)
656 (a/g)
702 (c/g)
717 (a/t)
81 1442/2490 3O 19-10254 199 87 (a/g) 3
99 (c/t)
158 (c/t)
71 1765/2519 3P 19-10236 147 75 (c/t) 3
76-78 (indel; ---/TTT)
106 (a/g)
72 FAS2(2519)^ 3P 19-10236 433 none
82 B7B20(2405)# 3 19-2405 217 none
83 2346/2476 4N 19-10231 293 25 (a/g) 4
60 (c/t)
106 (a/g)
250 (a/t)
84 1335/2442 4N 19-10200 241 44 (c/t) 6
81 (c/t)
100 (c/t)
117 (c/t)
140 (c/t)
174 (a/c)
91 2309/2408 4N 19-10212 233 56 (a/t) 4
73 (c/t)
82 (c/t)
204 (a/g)
89 2004/2043 4N 19-10212 558 189 (c/t) 5
341 (a/g)
489 (a/c)
526 (c/t)
530 (a/g)
90 2101/2204 4N 19-10212 288 38 (a/t) 9
46 (a/c)
109 (a/g)
176 (c/t)
206 (a/g)
226 (c/t)
227 (a/g)
235 (c/t)
255 (a/g)
88 1881/2465 4N 19-10158 257 38 (a/g) 7
81 (-/t)
87 (a/g)
129 (t/-)
195 (a/g)
207 (a/g)
219 (a/g)
87 1644/2359 4N 19-10158 217 139 (c/t) 3
160 (c/g)
171 (c/t)
86 1685/2366 4N 19-10158 227 73 (a/g) 4
143 (a/t)
179 (a/t)
200 (a/g)
92 1826/2182 4N 19-10174 245 29 (c/t) 8
31 (c/t)
38 (a/g)
53 (a/g)
55 (c/g)
66 (a/t)
140 (a/g)
185 (c/t)
85 2159/2205 4N 19-10109 244 48 (a/g) 6
69 (a/g)
97 (c/t)
150 (a/g)
165 (a/g)
179 (c/t)
70 1771/2510 4F2 19-10225 267 113 (a/g) 4
141 (a/g)
156 (a/g)
183 (a/g)
93 1463/2009 4F2 19-10192 223 68 (a/g) 6
107 (a/g)
137 (a/g)
153 (a/t)
158 (a/g)
164 (c/t)
94 2084/2131 4F2 19-10192 227 29 (a/g) 4
44 (c/t)
99 (c/t)
200 (a/t)
96 2074/2337 4F2 19-10126 215 51 (a/g) 6
65 (c/t)
122 (a/g)
161 (a/g)
169 (c/t)
177 (c/t)
98 2145/2386 4H 19-10104 237 50 (a/g) 5
71 (c/t)
107 (a/g)
191 (c/t)
209 (g/t)
97 2061/2424 4H 19-10104 257 56 (a/g) 5
73 (c/t)
132 (c/g)
154 (c/t)
177 (a/c)
95 1654/2166 4H 19-10204 156 31 (c/t) 4
64 (a/t)
108 (a/g)
126 (c/t)
99 1462/2445 4H 19-10162 180 34 (a/t) 4
41 (g/t)
77 (c/t)
141 (c/t)
101 2006/2431 4H 19-10166 251 59 (c/t) 6
132 (c/g)
175 (a/g)
183 (c/g)
195 (a/t)
215 (a/g)
100 1544/2477 4H 19-10166 236 34 (a/g) 5
106 (a/g)
194 (c/t)
196 (c/g)
204 (c/t)
148 C2F7 (6-2350)* 5M 19-2350 285 none
102 1855/2172 5M 19-10080 387 162 (a/g) 4
177 (c/t)
220 (a/g)
365 (c/t)
109 1899/2008 5M 19-10137 195 33-35 (indel; ---/CTT) 4
52 (c/t)
92 (c/g)
100 (c/t)
104 1718/2417-1 (SNF1) 5M 19-10137 543 252 (c/t) 3
366 (c/t)
387 (c/t)
105 1718/2417-2 5M 19-10137 306 159 (a/g) 1
106 1718/2417-3 5M 19-10137 301 89 (a/g) 5
216 (a/g)
226 (a/c)
232 (c/t)
259 (a/g)
107 1718/2417-4 5M 19-10137 298 32 (c/g) 10
33 (c/t)
38 (a/g)
40 (c/t)
43 (a/g)
53 (a/c)
71 (c/g)
75 (c/g)
91 (a/g)
5M 140 (a/g)
108 1718/2417-5 5M 19-10137 372 113 (c/t) 2
148 (c/t)
103 1718/2417 (HST3)^ 5M 19-10137 728 76 (c/t) 3
211 (c/t)
506 (c/t)
110 1445/2395 5M 19-10198 207 27 (a/g) 6
51 (a/t)
84 (c/t)
102 (a/g)
135 (c/t)
155 (a/g)
111 1922/2344 5M 19-10170 288 47 (c/g) 5
153 (c/t)
192 (g/t)
195 (c/t)
207 (c/t)
112 PDE1 ^_ 5M 19-10202 352 247 (a/g) 2
327 (c/t)
113 1969/2162 5M 19-10202 305 50 (a/g) 8
179 (c/t)
203 (a/g)
212 (a/g)
221 (a/g)
227 (a/g)
240 (a/g)
254 (a/t)
115 HEX1 ^ 5I 19-2472 453 none
114 DPH5 5I 19-10093 525 32 (c/t) 1
116 2093/2390 5I 19-10194 265 111 (a/g) 5
129 (c/t)
144 (c/t)
186 (a/g)
198 (a/g)
117 1817/2082 5I 19-10194 321 69 (c/t) 8
110 (a/g)
115 (c/t)
178 (a/t)
199 (c/g
206 (a/c)
211 (a/g)
232 (c/t)
118 1341/2493 5I 19-10194 276 49 (a/g) 6
172 (a/g)
202 (a/g)
240 (g/t)
241 (a/g)
244 (c/t)
119 F16n1 & 5I 19-10194 1821 none
120 2340/2493 5I 19-10194 160 104 (a/g) 2
134 (a/g
121 2154/2381 6O 19-10201 207 44 (c/g) 4
77 (c/g)
108 (c/t)
137 (a/g)
122 1578/2118 6O 19-10035 227 27 (a/g) 4
92 (a/g)
162 (c/t)
195 (c/t)
124 B15B20 #_ 6O 19-10176 283 52 (c/t) 5
69 (a/g)
109 (a/g)
211 (a/g)
240 (c/t)
125 B4B16 # 6O 19-10176 175 none
123 1534/2336 6O 19-10181 268 49 (c/t) 7
55 (a/t)
56 (a/t)
113 (a/g)
122 (c/t)
157 (c/t)
189 (c/g)
126 1735/2343 6O 19-10230 252 27 (c/t) 9
29 (c/t)
89 (g/t)
137 (c/g)
140 (a/g)
190 (c/t)
201(a/g)
203 (a/t)
231 (c/t)
127 1870/2315 6O 19-10230 271 30 (c/g) 7
84 (a/t)
129 (a/g)
134 (a/t)
166 (c/t)
248 (a/g)
249 (c/t)
128 1395/2385 6O 19-10230 208 70 (c/t) 5
79 (a/g)
86 (a/c)
127 (a/g)
177 (g/t)
129 1372/2355 6O 19-10233 279 24 (a/g) 4
63 (a/g)
93 (a/g)
257 (a/g)
130 1624/2448 6O 19-10233 212 31 (a/g) 7
44 (a/g)
69 (a/g)
141 (c/t)
144 (a/g)
159 (a/g)
183 (c/t)
131 1466/1889 6C 19-10031 256 88 (a/g) 2
180 (c/t)
132 2114/24046C 6C 19-10140 256 47 (g/t) 6
58 (c/t)
75 (a/g)
103 (c/g)
113 (a/g)
127 (a/t)
133 LEU2 ^ 7C 19-10262 358 174 (c/t); not in SC5314 1
134 C2n8 & 7C 19-10262 726 none
135 2236/2498(YDL114) 7F 19-10248 442 38 (a/g) 1
136 2397/2496(YKL084) 7F 19-10248 773 526 (a/t) 2
565 (c/t)
137 2397/2498(VMA11) 7F 19-10248 245 24 (a/c) 2
219 (c/t)
138 2174/2438(RBP1) 7F 19-10187 230 157 (a/t) 1
139 1491/2436 (YJL54-1) 7G 19-10219 319 42 (a/g) 2
45 (c/g)
140 1491/2436 (YJL54-2) 7G 19-10219 433 27 (a/g) 18
139 (c/t)
156 (a/g)
173 (a/g)
176 (a/g)
181 (c/g)
182 (a/g)
201 (a/t)
210 (c/t)
211 (c/t)
212 (a/g)
216 (a/g)
226 (c/g)
227 (c/t)
231 (a/t)
250 (a/c)
280 (c/t)
282 (g/t)
141 1883/2139(6.1345) 7G 19-10110 719 517 (c/t) 2
618 (c/t)
142 ARG4 ^ 7G 19-10253 196 92 (a/t/g); not in SC5314 (a)
143 1530/2473-1(6.282-1) 7G 19-10253 562 96 (a/c) 14
125 (c/t)
245 (c/t)
274 (a/g)
379 (c/t)
427 (c/t)
436 (c/t)
441 (c/t)
442 (a/g)
446 (a/g)
455 (c/t)
472 (a/g)
514 (c/t)
540 (a/c)
144 1530/2473-2(6.282-2) 7G 19-10253 282 19 (a/g) 6
34 (c/t)
53 (a/g)
99 (c/t)
183 (a/g)
252 (c/t)
145 1530/2473-3(6.282-3) 7G 19-10253 282 57 (c/t) 5
123 (c/t)
137 (a/g)
202 (a/g)
243 (c/t)
146 E15n7(6-2506)& 7G 19-2506 609 none
149 B5B7 # ?? 19-1996 742 656(a/g) 1

Order of SNP markers was revised based on additional information obtained from the BRI
website (http://candida.bri.nrc.ca/candida/alignments/index.cfm)
# - SNP markers from Forche et al. 1999
* - Markers from Graser et al. 1996
^ - Markers from Cowen et al. 1999
& - Markers from Xu et al. 1999
_ - the genome sequence of SC5314 indicated these loci to be homozygous
n.a. – not assigned

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